Siegfried Weisenburger*, Robert Prevedel* and Alipasha Vaziri Quantitative evaluation of two-photon calcium imaging modalities for high-speed volumetric calcium imaging in scattering brain tissue
Submitted (2017). (BioRxiv preprint: Download)
2016
Iain F. Davidson, Daniela Goetz, Maciej P. Zaczek, Maxim I. Molodtsov, Pim J. Huis in’t Veld, Florian Weissmann, Gabriele Litos, David A. Cisneros, Maria Ocampo‐Hafalla, Rene Ladurner, Frank Uhlmann, Alipasha Vaziri, and Jan‐Michael Peters Rapid movement and transcriptional re‐localization of human cohesin on DNA The EMBO Journal 35, 2671-2685 (2016). (Download)
Robert Prevedel, Aart J Verhoef, Alejandro J Pernía-Andrade*, Siegfried Weisenburger*, Ben S Huang, Tobias Nöbauer, Alma Fernández, Jeroen E Delcour, Peyman Golshani, Andrius Baltuska, and Alipasha Vaziri Fast volumetric calcium imaging across multiple cortical layers using sculpted light Nature Methods 13, 1021-1028 (2016). (Download)
Maxim I. Molodtsov, Christine Mieck, Jeroen Dobbelaere, Alexander Dammermann, Stefan Westermann and Alipasha Vaziri A force-induced directional switch of a molecular motor enables parallel microtubule bundle formation Cell 176:2, 539 (2016). (Download)
Jonathan N. Tinsley, Maxim I. Molodtsov, Robert Prevedel, David Wartmann, Jofre Espigulé-Pons, Mattias Lauwers, and Alipasha Vaziri Direct Detection of a Single Photon by Humans Nature Communications 7, 12172 (2016). (Download)
2015
Y. Park, H. Wang, T. Nobauer, A. Vaziri, and C. E. Priebe Anomaly Detection on Whole-Brain Functional Imaging of Neuronal Activity using Graph Scan Statistics ACM Conference on Knowledge Discovery and Data Mining (KDD), Workshop on Outlier Definition, Detection, and Description (ODDx3), 2015 (Download)
Paul Stevenson, Christoph Götz, Carlos R. Baiz, Jasper Akerboom, Andrei Tokmakoff, and Alipasha Vaziri Visualizing KcsA Conformational Changes upon Ion Binding by Infrared Spectroscopy and Atomistic Modeling J. Phys. Chem. B 2015, 119 (18), pp 5824–5831 (Download)
Ugur Sezer, Lisa Wörner, Johannes Horak, Lukas Felix, Jens Tüxen, Christoph Götz, Alipasha Vaziri, Marcel Mayor, and Markus Arndt Laser-induced acoustic desorption of natural and functionalized biochromophores Anal. Chem., 2015, 87 (11), pp 5614–5619 (Download)
C. Mieck, M. Molodtsov, K. Drzewicka, B. van der Vaart, G. Litos, G. Schmauss, A. Vaziri, S. Westermann Non-catalytic motor domains enable processive movement and functional diversification of the kinesin-14 Kar3 eLife 10.7554/eLife.04489 (Download)
P. Rupprecht, R. Prevedel, F. Groessl, W. Haubensak, & A. Vaziri Optimizing and extending light-sculpting microscopy for fast functional imaging in neuroscience Biomedical Optics Express Vol. 6, Issue 2, pp. 353-368 (Download)
2014
P. Stevenson, C. Goetz, C. R. Baiz, A. Vaziri & A. Tokmakoff 2D IR as an Experimental Probe of Ion-Induced Structural Changes in KcsA Biophysical Journal 106, 2, 539A (Download)
R. Prevedel*, Y. Yoon*, M. Hoffmann, N. Pak, G. Wetzstein, S.Kato, T. Schrödel, R. Raskar,M. Zimmer,E. Boyden and A. Vaziri (*joined first authors) Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy Nature Methods 11, 727–730 (Download)
2013
T. Schrödel*, R. Prevedel*, K. Aumayr, M. Zimmer & A. Vaziri (*joined first authors) Brain-wide 3D imaging of neuronal activity Caenorhabditis elegans with sculpted light Nature Methods 10.10: 1013-1020. (Download),
A. Tedeschi, G. Wutz, S. Huet, M. Jaritz, A. Wuensche, E.Schirghuber, I.Finley Davidson, W. Tang, D. Cisneros, V. Bhaskara, T. Nishiyama, A. Vaziri, A. Wutz, J. Ellenberg & J. Peters Wapl is an essential regulator of chromatin structure and chromosome segregation Nature501.7468: 564-568. (Download)
2012
J. R. McIntosh, M. I. Molodtsov and F. I. Ataullakhanov Biophysics of Mitosis Quarterly Reviews of Biophysics, pp 1-61
A. Vaziri and V. Emiliani Reshaping the Optical dimension in optogenetics Current Opinion in Neurobiology 22, 128-137 (Download)
2011
Z. Ganim, A. Tokmakoff and A. Vaziri Vibrational excitons in ionophores Experimental probes for quantum coherence-assisted ion transport and selectivity in ion channels
New J. Phys. 13 (113030) (Download)
York, AG., Ghitani, A., Vaziri, A., Davidson, MW., Shroff, H. Confined activation and subdiffractive localization enables whole-cell PALM with genetically expressed probes Nat Methods. 8(4):327-33 (Download)
M. Sevvana, C. Goetz, D. Goeke, C. Wimmer, C. Berens, W. Hillen and Y. A. Muller An Exclusive α/β Code Directs Allostery in TetR-Peptide Complexes Journal of Molecular Biology, Volume 416, Issue 1, 2012, Pages 46–56 (Download)
R. Prevedel, Y. Lu, W. Matthews, R. Kaltenbaek and K.J. Resch, Entanglement-Enhanced Classical Communication over a Noisy Classical Channel Phys. Rev. Lett. 106, 110505
R. Prevedel, D.R. Hamel, R. Colbeck, K. Fisher and K.J. Resch Experimental investigation of the uncertainty principle in the presence of quantum memory Nature Physics 7, 757-761
N. K. Langford, S. Ramelow, R. Prevedel, W. J. Munro, G. J. Milburn and A. Zeilinger Efficient quantum computing using coherent photon conversion Nature 478, 360-363
R. Prevedel, K.M. Schreiter, J. Lavoie and K.J. Resch Classical analog for dispersion cancellation of entangled photons with local detection Phys. Rev. A 84, 051803(R)
2010
BK. Andrasfalvy, BV. Zemelman, J. Tang, A. Vaziri, Two-photon single-cell optogenetic control of neuronal activity by sculpted light Proc Natl Acad Sci U S A. 107(26):11981-6 (Download)
Losonczy, A., Zemelman, BV., Vaziri, A., Magee, JC. Network mechanisms of theta related neuronal activity in hippocampal CA1 pyramidal neurons Nat Neurosci. 13(8):967-72 (Download)
Tang, J., Akerboom, J., Vaziri, A., Looger, LL., Shank, CV. Near-isotropic 3D optical nanoscopy with photon-limited chromophores Proc Natl Acad Sci U S A. 107(22):10068-73 (Download)
Vaziri A., Plenio M. Quantum coherence in ion channels: resonances, transport and verification New Journal of Physics. 12(085001) (Download)
Vaziri, A., Shank, CV. Ultrafast widefield optical sectioning microscopy by multifocal temporal focusing Opt Express. 18(19):19645-55 (Download)
2008
Vaziri, A., Tang, J., Shroff, H., Shank, CV. Multilayer three-dimensional super resolution imaging of thick biological samples Proc Natl Acad Sci U S A. 105(51):20221-6 (Download)
2006
Andersen, MF., Ryu, C., Cladé, P., Natarajan, V., Vaziri, A., Helmerson, K., Phillips, WD. Quantized rotation of atoms from photons with orbital angular momentum Phys Rev Lett. 97(17):170406 (Download)
Gröblacher S., Jennewein T., Vaziri A., Weihs G., Zeilinger A. Experimental quantum cryptography with qutrits New Journal of Physics. 8(75) (Download)
Ryu, C., Andersen, MF., Vaziri, A., d’Arcy, MB., Grossman, JM., Helmerson, K., Phillips, WD. High-order quantum resonances observed in a periodically kicked Bose-Einstein condensate Phys Rev Lett. 96(16):160403 (Download)
2005
Molina-Terriza, G., Vaziri, A., Ursin, R., Zeilinger, A. Experimental quantum coin tossing Phys Rev Lett. 94(4):040501 (Download)
2004
Molina-Terriza, G., Vaziri, A., Rehácek, J., Hradil, Z., Zeilinger, A. Triggered qutrits for quantum communication protocols Phys Rev Lett. 92(16):167903 (Download)
2003
Vaziri, A., Pan, JW., Jennewein, T., Weihs, G., Zeilinger, A. Concentration of higher dimensional entanglement: qutrits of photon orbital angular momentum Phys Rev Lett. 91(22):227902 (Download)
2002
Vaziri A, Weihs G., Zeilinger A. Superpositions of the orbital angular momentum for applications in quantum experiments Journal of Optics B: Quantum and Semiclassical Optics. 4(2):S1-S5 (Download)
Vaziri, A., Weihs, G., Zeilinger, A. Experimental two-photon, three-dimensional entanglement for quantum communication Phys Rev Lett. 89(24):240401 (Download)
2001
Mair, A., Vaziri, A., Weihs, G., Zeilinger, A. Entanglement of the orbital angular momentum states of photons Nature. 412(6844):313-6 (Download)
