2019

• Siegfried Weisenburger, Frank Tejera, Jeffrey Demas, Brandon Chen, Jason Manley, Fraser T. Sparks, Francisca Martínez Traub, Tanya Daigle, Hongkui Zeng, Attila Losonczy, and Alipasha Vaziri
  Volumetric Ca²⁺ Imaging in the Mouse Brain using Hybrid Multiplexed Sculpted Light (HyMS) Microscopy
  Cell 177, 1–17 (2019). (Download)
  Featured as a Nature Methods Research Highlight

2018

• Oliver Skocek, Tobias Nöbauer, Lukas Weilguny, Francisca Martínez Traub, Chuying Naomi Xia, Maxim I. Molodtsov, Abhinav Grama, Masahito Yamagata, Daniel Aharoni, David D. Cox, Peyman Golshani, and Alipasha Vaziri
  High-speed volumetric imaging of neuronal activity in freely moving rodents
  Nature Methods 15, 429–432 (2018). (Download)

• Siegfried Weisenburger and Alipasha Vaziri
  A Guide to Emerging Technologies for Large-Scale and Whole-Brain Optical Imaging of Neuronal Activity
  Annual Review of Neuroscience 41, 431 – 452 (2018). (Download | arXiv preprint)

• Michael A. Taylor, Tobias Nöbauer, Alejandro Pernia-Andrade, Friederike Schlumm, and Alipasha Vaziri
  Brain-wide 3D light-field imaging of neuronal activity with speckle-enhanced resolution
  Optica 5, 345-353 (2018). (Download, Open Access)

2017

• Tobias Nöbauer, Oliver Skocek, Alejandro J Pernía-Andrade, Lukas Weilguny, Francisca Martínez Traub, Maxim I Molodtsov, and Alipasha Vaziri
  Video rate volumetric Ca²⁺ imaging across cortex using seeded iterative demixing (SID) microscopy
  Nature Methods 14, 811-818 (2017). (Download | bioRxiv preprint)

• Siegfried Weisenburger*, Robert Prevedel* and Alipasha Vaziri
  Quantitative evaluation of two-photon calcium imaging modalities for high-speed volumetric calcium imaging in scattering brain tissue
  Submitted (2017). (bioRxiv preprint)

2016

• Iain F. Davidson, Daniela Goetz, Maciej P. Zaczek, Maxim I. Molodtsov, Pim J. Huis in’t Veld, Florian Weissmann, Gabriele Litos, David A. Cisneros, Maria Ocampo‐Hafalla, Rene Ladurner, Frank Uhlmann, Alipasha Vaziri, and Jan‐Michael Peters
  Rapid movement and transcriptional re‐localization of human cohesin on DNA
  The EMBO Journal 35, 2671-2685 (2016). (Download, Open Access)

• Robert Prevedel, Aart J Verhoef, Alejandro J Pernía-Andrade*, Siegfried Weisenburger*, Ben S Huang, Tobias Nöbauer, Alma Fernández, Jeroen E Delcour, Peyman Golshani, Andrius Baltuska, and Alipasha Vaziri
  Fast volumetric calcium imaging across multiple cortical layers using sculpted light
  Nature Methods 13, 1021-1028 (2016). (Download | PMC Full text)

• Maxim I. Molodtsov, Christine Mieck, Jeroen Dobbelaere, Alexander Dammermann, Stefan Westermann and Alipasha Vaziri
  A force-induced directional switch of a molecular motor enables parallel microtubule bundle formation
  Cell 176:2, 539 (2016). (Download, Open Access)

• Jonathan N. Tinsley, Maxim I. Molodtsov, Robert Prevedel, David Wartmann, Jofre Espigulé-Pons, Mattias Lauwers, and Alipasha Vaziri
  Direct Detection of a Single Photon by Humans
  Nature Communications 7, 12172 (2016). (Download, Open Access)

2015

• Y. Park, H. Wang, T. Nobauer, A. Vaziri, and C. E. Priebe
  Anomaly Detection on Whole-Brain Functional Imaging of Neuronal Activity using Graph Scan Statistics
  ACM Conference on Knowledge Discovery and Data Mining (KDD), Workshop on Outlier Definition, Detection, and Description (ODDx3) (2015). (Download PDF)

• Paul Stevenson, Christoph Götz, Carlos R. Baiz, Jasper Akerboom, Andrei Tokmakoff, and Alipasha Vaziri
  Visualizing KcsA Conformational Changes upon Ion Binding by Infrared Spectroscopy and Atomistic Modeling
  J. Phys. Chem. B 119 (18), 5824–5831 (2015). (Download)

• Ugur Sezer, Lisa Wörner, Johannes Horak, Lukas Felix, Jens Tüxen, Christoph Götz, Alipasha Vaziri, Marcel Mayor, and Markus Arndt
  Laser-induced acoustic desorption of natural and functionalized biochromophores
  Anal. Chem., 87 (11), 5614-5619 (2015). (Download)

• Tobias Nöbauer, Robert Prevedel, Friederike Schlumm, Maximilian Hoffmann, Maxim Molodtsov, and Alipasha Vaziri
  Whole-brain dynamics of neuronal circuits enabled by sculpted light and light field microscopy
  IEEE/EMBS – Neural Engineering, 869-872 (2015) (Download)

• C. Mieck, M. Molodtsov, K. Drzewicka, B. van der Vaart, G. Litos, G. Schmauss, A. Vaziri, and S. Westermann
  Non-catalytic motor domains enable processive movement and functional diversification of the kinesin-14 Kar3
  eLife 10.7554/eLife.04489 (2015). (Download, Open Access)

• P. Rupprecht, R. Prevedel, F. Groessl, W. Haubensak, and A. Vaziri
  Optimizing and extending light-sculpting microscopy for fast functional imaging in neuroscience
  Biomedical Optics Express 6:2, 353-368 (2015). (Download) | arXiv preprint)

2014

• Jofre Espigulé-Pons, Christoph Goetz, Alipasha Vaziri, and Markus Arndt
  Physical constraints for the Stoneham model for light-dependent magnetoreception
  arXiv:1412.7369 (2014). (Download)

• P. Stevenson, C. Goetz, C. R. Baiz, A. Vaziri, and A. Tokmakoff
  2D IR as an Experimental Probe of Ion-Induced Structural Changes in KcsA
  Biophysical Journal 106:2, 539A (2014). (Download)

• R. Prevedel*, Y. Yoon*, M. Hoffmann, N. Pak, G. Wetzstein, S.Kato, T. Schrödel, R. Raskar,M. Zimmer,E. Boyden and A. Vaziri
  Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy
  Nature Methods 11, 727–730 (2014). (Download | arXiv preprint)
  

2013

• T. Schrödel*, R. Prevedel*, K. Aumayr, M. Zimmer, and A. Vaziri
  Brain-wide 3D imaging of neuronal activity Caenorhabditis elegans with sculpted light
  Nature Methods 10, 1013-1020 (2013). (Download | arXiv preprint)

• A. Tedeschi, G. Wutz, S. Huet, M. Jaritz, A.  Wuensche, E.Schirghuber, I.Finley Davidson, W. Tang, D. Cisneros, V. Bhaskara, T. Nishiyama, A. Vaziri, A. Wutz, J. Ellenberg, and J. Peters
  Wapl is an essential regulator of chromatin structure and chromosome segregation
  Nature 501, 564-568 (2013). (Download)

2012

• A. Vaziri and V. Emiliani
  Reshaping the Optical dimension in optogenetics
  Current Opinion in Neurobiology 22, 128-137 (Download)

2011

• Z. Ganim, A. Tokmakoff, and A. Vaziri
  Vibrational excitons in ionophores Experimental  probes for quantum coherence-assisted ion transport and selectivity in ion channels
  New J. Phys. 31, 113030 (2011). (Download)

• York, AG., Ghitani, A., Vaziri, A., Davidson, MW., and Shroff, H.
  Confined activation and subdiffractive localization enables whole-cell PALM with genetically expressed probes
  Nature Methods 8, 327-333 (2011). (Download)

2010

• BK. Andrasfalvy, BV. Zemelman, J. Tang, and A. Vaziri,
  Two-photon single-cell optogenetic control of neuronal activity by sculpted light
  Proc. Natl. Acad. Sci. USA 107(26), 11981-11986 (2010). (Download)

• Losonczy, A., Zemelman, BV., Vaziri, A., and Magee, JC.
  Network mechanisms of theta related neuronal activity in hippocampal CA1 pyramidal neurons
  Nature Neuroscience 13(8), 967-972 (2010). (Download)

• Tang, J., Akerboom, J., Vaziri, A., Looger, LL., and Shank, CV.
  Near-isotropic 3D optical nanoscopy with photon-limited chromophores
  Proc. Natl. Acad. Sci. USA 107(22), 10068-10073 (2010). (Download)

• Vaziri, A. and Plenio, M.
  Quantum coherence in ion channels: resonances, transport and verification
  New Journal of Physics 12, 085001 (2010). (Download)

• Vaziri, A. and Shank, CV.
  Ultrafast widefield optical sectioning microscopy by multifocal temporal focusing
  Opt Express. 18(19), 19645-19655 (2010). (Download)

2009

• K. Helmerson, M. F. Andersen, P. Cladé, V. Natarajan, W. D. Phillips, A. Ramanathan, C. Ryu, and A. Vaziri
  Vortices and Persistent Currents: Rotating a Bose-Einstein Condensate Using Photons with Orbital Angular Momentum
  Topologica 2:1 002 (2009). (Download)

2008

• Vaziri, A., Tang, J., Shroff, H., and Shank, CV.
  Multilayer three-dimensional super resolution imaging of thick biological samples
  Proc. Natl. Acad. Sci. USA 105(51), 20221-20226 (2008). (Download)

2007

• K. Helmerson, M. F. Andersen, C. Ryu, V. Nararajan, A. Vaziri, and W. D. Phillips
  Generating Persistent Currents States of Atoms Using Orbital Angular Momentum of Photons
  Nucl. Phys. A 790, 705C-712C (2007). (Download)

2006

• Andersen, MF., Ryu, C., Cladé, P., Natarajan, V., Vaziri, A., Helmerson, K., and Phillips, WD.
  Quantized rotation of atoms from photons with orbital angular momentum
  Phys Rev Lett. 97(17), 170406 (2006). (Download)

• Kristian Helmerson, Mikkel F. Andersen, Changhyun Ryu, Pierre Cladé, Vasant Natarajan, Alipasha Vaziri, Azure Hansen, and William D. Phillips
  Rotating a Bose-Einstein condensate using photons with orbital angular momentum
  Proc. SPIE 6326, Optical Trapping and Optical Micromanipulation III, 632603 (2006). (Download)

• Gröblacher S., Jennewein T., Vaziri A., Weihs G., and Zeilinger A.
  Experimental quantum cryptography with qutrits
  New Journal of Physics 8 75 (2006). (Download)

• Ryu, C., Andersen, MF., Vaziri, A., d’Arcy, MB., Grossman, JM., Helmerson, K., and Phillips, WD.
  High-order quantum resonances observed in a periodically kicked Bose-Einstein condensate
  Phys Rev Lett. 96(16), 160403 (2006). (Download)

2005

• Molina-Terriza, G., Vaziri, A., Ursin, R., and Zeilinger, A.
  Experimental quantum coin tossing
  Phys Rev Lett. 94(4), 040501 (2005). (Download)

2004

• Molina-Terriza, G., Vaziri, A., Rehácek, J., Hradil, Z., and Zeilinger, A.
  Triggered qutrits for quantum communication protocols
  Phys Rev Lett. 92(16), 167903 (2004). (Download)

2003

• Vaziri, A., Pan, JW., Jennewein, T., Weihs, G., and Zeilinger, A.
  Concentration of higher dimensional entanglement: qutrits of photon orbital angular momentum
  Phys Rev Lett. 91(22), 227902 (2003). (Download)

2002

• Vaziri A., Weihs G., and Zeilinger A.
  Superpositions of the orbital angular momentum for applications in quantum experiments
  Journal of Optics B: Quantum and Semiclassical Optics 4(2), S1-S5 (2002). (Download)

• Vaziri, A., Weihs, G., and Zeilinger, A.
  Experimental two-photon, three-dimensional entanglement for quantum communication
  Phys Rev Lett. 89(24), 240401 (2002). (Download)

2001

• Mair, A., Vaziri, A., Weihs, G., and Zeilinger, A.
  Entanglement of the orbital angular momentum states of photons
  Nature 412(6844), 313-316 (2001). (Download)